generateAnnotatedMatrix {NormalyzerDE} | R Documentation |
Extracts key values (p-value, adjusted p-value, log2-fold change and average expression values) from an NormalyzerStatistics instance and appends these to the annotation- and data-matrices
generateAnnotatedMatrix(nst, prefixSep = "_", compLabels = NULL)
nst |
NormalyzerDE statistics object. |
prefixSep |
Character string for separating the prefix names from the statistics suffix |
compLabels |
Vector containing strings to use as prefix for statistical comparisons |
outDf Annotated statistics matrix
data(example_stat_summarized_experiment) statObj <- NormalyzerStatistics(example_stat_summarized_experiment) statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), condCol="group", type="limma") annotDf <- generateAnnotatedMatrix(statObj)