geneClustering {NanoStringQCPro} | R Documentation |
Gene clustering heatmap
geneClustering(rccSet, outputFile, main = "Gene clustering", covar = NULL)
rccSet |
An RccSet |
outputFile |
Output PNG filename |
main |
Plot title |
covar |
Colname in the rccSet's fData that can be used to label genes by a category of interest |
A PNG file showing clustering of genes by correlation across an experiment Positive and negative control probes and any zero-variance genes (typically housekeeping genes) are omitted from the heatmap. The width and height of the PNG file are set to vary with the size of the input.
Dorothee Nickles, Robert Ziman