plot_gene_heatmap {NanoMethViz} | R Documentation |
Plot gene methylation heatmap
plot_gene_heatmap(x, gene, ...) ## S4 method for signature 'NanoMethResult,character' plot_gene_heatmap( x, gene, window_prop = 0.3, pos_style = c("to_scale", "compact") )
x |
the NanoMethResult object. |
gene |
the gene symbol for the gene to plot. |
... |
additional arguments |
window_prop |
the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length. |
pos_style |
the style for plotting the base positions along the x-axis. Defaults to "to_scale", plotting (potentially) overlapping squares along the genomic position to scale. The "compact" options plots only the positions with measured modification. |
a ggplot object of the heatmap
a ggplot plot containing the heatmap.
nmr <- load_example_nanomethresult() plot_gene_heatmap(nmr, "Peg3") nmr <- load_example_nanomethresult() plot_gene_heatmap(nmr, "Peg3")