get_chain_file {MungeSumstats}R Documentation

Download chain file for liftover

Description

Download chain file for liftover

Usage

get_chain_file(
  build_conversion = c("hg38ToHg19", "hg19ToHg38"),
  ucsc_ref = c("hg19", "hg38"),
  save_dir = tempdir(),
  verbose = TRUE
)

Arguments

build_conversion

converting from what build to what? hg38ToHg19 or hg19ToHg38

ucsc_ref

converting from what? hg19 or hg38

save_dir

where is the chain file saved? Default is a temp directory

verbose

extra messages printed? Default is TRUE

Value

loaded chain file for liftover

Source

UCSC chain files


[Package MungeSumstats version 1.2.1 Index]