check_save_path {MungeSumstats} | R Documentation |
Check if save path and log folder is appropriate
check_save_path( save_path, log_folder, log_folder_ind, tabix_index, write_vcf = FALSE )
save_path |
File path to save formatted data. Defaults to
|
log_folder |
Filepath to the directory for the log files and the log of MungeSumstats messages to be stored. Default is a temporary directory. |
log_folder_ind |
Binary Should log files be stored containing all filtered out SNPs (separate file per filter). The data is outputted in the same format specified for the resulting sumstats file. The only exception to this rule is if output is vcf, then log file saved as .tsv.gz. Default is FALSE. |
tabix_index |
Index the formatted summary statistics with tabix for fast querying. |
write_vcf |
Whether to write as VCF (TRUE) or tabular file (FALSE). |
Corrected save_path
, the file type, the separator, corrected
log_folder
,the log file extension