load_snp_loc_data {MungeSumstats}R Documentation

Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

Description

Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

Usage

load_snp_loc_data(ref_genome, msg = NULL)

Arguments

ref_genome

name of the reference genome used for the GWAS (GRCh37 or GRCh38)

msg

Optional name of the column missing from the dataset in question

Value

SNP_LOC_DATA SNP positions and alleles for Homo sapiens extracted from NCBI dbSNP Build 144

Examples

SNP_LOC_DATA <- load_snp_loc_data("GRCH37")

[Package MungeSumstats version 1.1.33 Index]