read_vcf {MungeSumstats} | R Documentation |
Read in VCF format
read_vcf( path, nThread = 1, temp_save = FALSE, keep_extra_cols = FALSE, save_path = tempfile(), nrows = Inf )
path |
Filepath for the summary statistics file to be formatted. A dataframe or datatable of the summary statistics file can also be passed directly to MungeSumstats using the path parameter. |
nThread |
Number of threads to use for parallel processes. |
temp_save |
Save temprorary file before proceeding, |
keep_extra_cols |
Keep non-standard columns. |
save_path |
File path to save formatted data. Defaults to
|
nrows |
integer. The (maximal) number of lines to read.
If |
The modified sumstats_file