MultiAssayExperimentToMAF {MultiAssayExperiment}R Documentation

Convert MultiAssayExperiment to MAF class

Description

Take a MultiAssayExperiment object with specific mutation assays and convert these into a maftools representation.

Usage

MultiAssayExperimentToMAF(x, synAssay = "maf_syn", nonSynAssay = "maf_nonSyn")

Arguments

x

A MultiAssayExperiment object

synAssay

character(1) The name of the synonymous variant classifications.

nonSynAssay

character(1) The name of the assay with non-synonymous variant classifications.


[Package MultiAssayExperiment version 1.19.16 Index]