URA {MoonlightR} | R Documentation |
This function carries out the upstream regulator analysis
URA(dataGRN, DEGsmatrix, BPname, nCores = 1)
dataGRN |
output GNR function |
DEGsmatrix |
output DPA function |
BPname |
biological processes |
nCores |
number of cores to use |
an adjacent matrix
dataDEGs <- DEGsmatrix dataGRN <- GRN(TFs = rownames(dataDEGs)[1:100], DEGsmatrix = dataDEGs, DiffGenes = TRUE, normCounts = dataFilt) dataURA <-URA(dataGRN = dataGRN, DEGsmatrix = dataDEGs, BPname = c("apoptosis", "proliferation of cells"))