show,diffAnalysisClass-method {MicrobiotaProcess} | R Documentation |
method extensions to show for diffAnalysisClass or alphasample objects.
## S4 method for signature 'diffAnalysisClass' show(object) ## S4 method for signature 'alphasample' show(object) ## S4 method for signature 'MPSE' show(object)
object |
object, diffAnalysisClass or alphasample class |
print info
Shuangbin Xu
## Not run: data(kostic2012crc) kostic2012crc %<>% as.phyloseq() head(phyloseq::sample_data(kostic2012crc),3) kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024) table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS) set.seed(1024) diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS", mlfun="lda", filtermod="fdr", firstcomfun = "kruskal.test", firstalpha=0.05, strictmod=TRUE, secondcomfun = "wilcox.test", subclmin=3, subclwilc=TRUE, secondalpha=0.01, lda=3) show(diffres) ## End(Not run)