mp_extract_dist {MicrobiotaProcess} | R Documentation |
extract the dist object from MPSE or tbl_mpse object
mp_extract_dist(x, distmethod, env.flag = FALSE, .group = NULL) ## S4 method for signature 'MPSE' mp_extract_dist(x, distmethod, env.flag = FALSE, .group = NULL) ## S4 method for signature 'tbl_mpse' mp_extract_dist(x, distmethod, env.flag = FALSE, .group = NULL) ## S4 method for signature 'grouped_df_mpse' mp_extract_dist(x, distmethod, env.flag = FALSE, .group = NULL)
x |
MPSE object or tbl_mpse object |
distmethod |
character the method of calculated distance. |
env.flag |
logical whether extract the distance of samples calculated based on continuous environment factors, default is FALSE. |
.group |
the column name of sample information, default is NULL, when it is provided, a tibble that can be visualized via ggplot2 will return. |
dist object or tbl_df object when .group is provided.