get_dist {MicrobiotaProcess} | R Documentation |
calculate distance
get_dist(obj, ...) ## S3 method for class 'data.frame' get_dist( obj, distmethod = "euclidean", taxa_are_rows = FALSE, sampleda = NULL, tree = NULL, method = "hellinger", ... ) ## S3 method for class 'phyloseq' get_dist(obj, distmethod = "euclidean", method = "hellinger", ...)
obj |
phyloseq, phyloseq class or data.frame nrow sample * ncol feature. |
..., |
additional parameters. |
distmethod |
character, default is "euclidean",
see also |
taxa_are_rows |
logical, default is FALSE. |
sampleda |
data.frame, nrow sample * ncol factors. |
tree |
object, the phylo class, see also |
method |
character, default is hellinger,
see alse |
distance class contianed distmethod and originalD attr
## Not run: data(test_otu_data) distclass <- get_dist(test_otu_data) hcsample <- get_clust(distclass) ## End(Not run)