collapse_deg {MetaVolcanoR}R Documentation

A function to filter out geneIDs standing for the same gene name

Description

This function to remove redundant geneIDs standing for the same gene name

Usage

collapse_deg(diffexp, genenamecol, pcriteria)

Arguments

diffexp

data.frame/data.table output of the deg.def() function

genenamecol

the column name of the gene name variable <string>

pcriteria

the column name of the pvalue criteria to consider <string>

Value

data.table differential expression results with unique gene names

Examples

data(diffexplist)
diffexp <- collapse_deg(diffexplist[[1]], "Symbol", "pvalue")
head(diffexp, 3)

[Package MetaVolcanoR version 1.7.1 Index]