getMafRef {MesKit}R Documentation

getMafRef

Description

getMafRef

Usage

getMafRef(object)

## S4 method for signature 'Maf'
getMafRef(object)

Arguments

object

An object of Maf

Value

Human reference genome versions of Maf

Examples

maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getMafRef(maf$V402)

[Package MesKit version 1.3.0 Index]