biocrates {MatrixQCvis}R Documentation

Convert Biocrates xlsx output to 'SummarizedExperiment' object

Description

The function 'biocrates' will create a 'SummarizedExperiment' from a Biocrates xlsx file. The function 'biocrates' takes as input the path to a .xlsx file (Biocrates output) and additional parameters given to the 'read.xlsx' function from the 'openxlsx' package (e.g. specifying the sheet name or index by 'sheet').

Usage

biocrates(file, sheet, ...)

Arguments

file

'character'

sheet

'character' or 'numeric', the name or index of the sheet to read data from

...

additional parameters given to 'read.xslx'

Details

The column "Sample Identification" has to contain unique identifiers (no duplications).

Value

'SummarizedExperiment' object

Examples

file <- "path/to/biocrates/object"
biocrates(file = file, sheet = 1)


[Package MatrixQCvis version 1.2.2 Index]