maxQuant {MatrixQCvis} | R Documentation |
The function 'maxQuant' will create a 'SummarizedExperiment' from a MaxQuant xlsx file. The function 'maxQuant' takes as input the path to a .xlsx file (MaxQuant output) and additional parameters given to the 'read.xlsx' function from the 'openxlsx' package (e.g. specifying the sheet name or index by 'sheet').
maxQuant(file, type = c("iBAQ", "LFQ"), sheet, ...)
file |
'character' |
type |
'character', either 'iBAQ' or 'LFQ' |
sheet |
'character' or 'numeric', the name or index of the sheet to read data from |
... |
additional parameters given to 'read.xslx' |
The argument 'type' will specify if the 'iBAQ' or 'LFQ' values are taken.
'SummarizedExperiment' object
file <- "path/to/maxQuant/object" maxQuant(file = file, type = "iBAQ", sheet = 1)