MSstatsSummarizeTMT {MSstatsTMT} | R Documentation |
Protein summarization for TMT data
MSstatsSummarizeTMT( input, method, impute, max_quantile_censored = NULL, log_file_path = NULL )
input |
data.table with TM quant data |
method |
Four different summarization methods to protein-level can be performed : "msstats"(default), "MedianPolish", "Median", "LogSum". |
impute |
only for method="msstats". TRUE (default) imputes missing values by Accelated failure model. FALSE uses minimum value to impute the missing value for each peptide precursor ion. |
max_quantile_censored |
We assume missing values are censored. maxQuantileforCensored is Maximum quantile for deciding censored missing value, for instance, 0.999. Default is Null. |
log_file_path |
path to a MSstats log file |
data.table