isotopeError {MSGFplus} | R Documentation |
These functions allow you to retrieve and set the isotope error used when calculating the parent ion error range
isotopeError(object) isotopeError(object) <- value ## S4 method for signature 'msgfPar' isotopeError(object) ## S4 replacement method for signature 'msgfPar,numeric' isotopeError(object) <- value ## S4 replacement method for signature 'msgfPar,msgfParIsotopeError' isotopeError(object) <- value
object |
An msgfPar object |
value |
Either an integer vector or an msgfParIsotopeError object |
In case of the getter an integer vector
msgfPar
: Get the isotope error currently used
object = msgfPar,value = numeric
: Set the isotope error with an integer vector
object = msgfPar,value = msgfParIsotopeError
: Set the isotope error with an msgfParIsotopeError
object
Other msgfPar-getter_setter: chargeRange
,
db
, enzyme
,
fragmentation
, instrument
,
lengthRange
, matches
,
mods
, ntt
,
protocol
, tda
,
tolerance
parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta')) isotopeError(parameters) <- c(0, 3) isotopeError(parameters)