tolerance {MSGFplus} | R Documentation |
These functions allow you to retrieve and set the tolerance used for matching parent ions to peptides in the database
tolerance(object) tolerance(object) <- value toleranceRange(object) toleranceRange(object) <- value toleranceUnit(object) toleranceUnit(object) <- value ## S4 method for signature 'msgfPar' tolerance(object) ## S4 method for signature 'msgfPar' toleranceRange(object) ## S4 method for signature 'msgfPar' toleranceUnit(object) ## S4 replacement method for signature 'msgfPar,numeric' toleranceRange(object) <- value ## S4 replacement method for signature 'msgfPar,character' toleranceUnit(object) <- value ## S4 replacement method for signature 'msgfPar,character' tolerance(object) <- value ## S4 replacement method for signature 'msgfPar,msgfParTolerance' tolerance(object) <- value
object |
An msgfPar object |
value |
For tolerance a character vector of length 2, each element of the form '<value> <unit>'. For toleranceUnit a string. For toleranceRange a numeric vector of length 2. |
For tolerance a character vector with the lower and upper tolerance limit with unit. For toleranceUnit a string with the unit used. For toleranceRange a numeric vector with lower and upper tolerance limit.
msgfPar
: Get the lower and upper bounds of the tolerance
msgfPar
: Get the lower and upper bounds of the tolerance
msgfPar
: Get the unit the tolerance is measured in
object = msgfPar,value = numeric
: Set the lower and upper bounds of the tolerance using a
numeric vector of length 2
object = msgfPar,value = character
: Set the unit the tolerance is meassured in
object = msgfPar,value = character
: Set the lower and upper bounds of the tolerance using a
character vector of length 2, where each element is of the form '<value>
<unit>'
object = msgfPar,value = msgfParTolerance
: Set the lower and upper bounds of the tolerance using
an msgfParTolerance object
Other msgfPar-getter_setter: chargeRange
,
db
, enzyme
,
fragmentation
, instrument
,
isotopeError
, lengthRange
,
matches
, mods
,
ntt
, protocol
,
tda
parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta')) tolerance(parameters) <- c('20 ppm', '20 ppm') toleranceUnit(parameters) <- 'Da' toleranceRange(parameters) <- c(1.5, 1.5) tolerance(parameters)