make_MQCombined {MQmetrics}R Documentation

Read MaxQuant Tables From Directory

Description

Read MaxQuant Tables From Directory

Usage

make_MQCombined(MQPathCombined, remove_contaminants = TRUE)

Arguments

MQPathCombined

The directory to the "combined" folder where the MaxQuant results are stored.

remove_contaminants

Whether or not to remove contaminants, reverse and identified by one one peptide.

Value

The files from the MaxQuant with the contaminants and Reverse hits removed.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)

[Package MQmetrics version 1.1.8 Index]