PlotProteinPeptideRatio {MQmetrics} | R Documentation |
Identification Ratio Between Peptides and Proteins
PlotProteinPeptideRatio( MQCombined, intensity_type = "Intensity", long_names = FALSE, sep_names = NULL )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
intensity_type |
The type of intensity of interest. Values: 'Intensity' or 'LFQ'. Default = 'Intensity'. |
long_names |
If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE. |
sep_names |
If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL. |
Returns one plot showing the proteins identified vs the peptide/protein ratio in each experiment.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotProteinPeptideRatio(MQCombined)