PlotiRT {MQmetrics} | R Documentation |
Max intensities of the iRT peptides in each sample.
PlotiRT( MQCombined, show_calibrated_rt = FALSE, tolerance = 0.001, plots_per_page = 5 )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
show_calibrated_rt |
If TRUE, it will also show the calibrated retention time of each iRT peptide. By default = FALSE. |
tolerance |
Error maximum to find the iRT peptides by m/z value. by default is 0.001. |
plots_per_page |
Establish the maximum number of plots per page. |
A plot showing the iRT peptide in each sample vs the Retention time.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotiRT(MQCombined)