PlotProteinCoverage {MQmetrics} | R Documentation |
Protein coverage and degradation.
PlotProteinCoverage( MQCombined, UniprotID = NULL, log_base = 2, segment_width = 2, palette = "Set2", plots_per_page = 5 )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
UniprotID |
Uniprot ID of the protein of interest. |
log_base |
The logarithmic scale for the intensity. Default is 2. |
segment_width |
Width of the segments to improve visualization. Default is 1. |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. |
plots_per_page |
Establish the maximum number of plots per page. |
Two plots for each sample, the end position vs the start position of each peptide of the given protein found. And the Intensity of a given peptide and its length.
MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics') MQCombined <- make_MQCombined(MQPathCombined) PlotProteinCoverage(MQCombined, UniprotID = 'Q15149')