PlotMsMs {MQmetrics} | R Documentation |
Comparison of the MS/MS submitted and identified in each sample.
PlotMsMs( MQCombined, long_names = FALSE, sep_names = NULL, position_dodge_width = 1, palette = "Set2" )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
long_names |
If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE. |
sep_names |
If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL. |
position_dodge_width |
Position of the columns within each others. |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. |
Plots the MS/MS submitted and Identified in each sample.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotMsMs(MQCombined)