ReportTables {MQmetrics} | R Documentation |
Report Tables with summary data
ReportTables( MQCombined, long_names = FALSE, sep_names = NULL, log_base = 2, intensity_type = "Intensity" )
MQCombined |
The directory to the "combined" folder where the MaxQuant results are stored. |
long_names |
If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE. |
sep_names |
If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL. |
log_base |
The logarithmic scale for the intensity. Default is 2. |
intensity_type |
The type of intensity. Values: 'Intensity' or 'LFQ'. |
A list with four tables are generated: - Protein Information - Intensity Information - Peptide Charge Information - Peptide hydrophobicity Information
MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics') MQCombined <- make_MQCombined(MQPathCombined) ReportTables(MQCombined)