plotEvents {MOMA} | R Documentation |
Plot barchart of genomic events
plotEvents( summary.vec, highlight.genes = NULL, genomeBand_2_gene = NULL, samples.total, max.muts = 10, max.cnv = 5 )
summary.vec |
: named vector of the counts, named 'Event name':'Type' where type is 'mut', 'amp', 'del', 'fus'. Mutations are in Entrez ID Amp/Deletion CNV events are in genomic band location |
highlight.genes |
: well known genes to highlight in the analysis in |
genomeBand_2_gene |
: mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic loci |
samples.total |
: number of samples in the subtype, used to calculate percentages |
max.muts |
: maximum number of mutations to get per sample, default is 10 |
max.cnv |
: maximum number of cnvs to per sample, default is 5 |
plot object