rea {MOMA} | R Documentation |
This function calculates an Enrichment Score of Association based on how the features rank on the samples sorted by a specific gene
rea(eset, regulon, minsize = 1, maxsize = Inf, event.type = NA, verbose)
eset |
Numerical matrix |
regulon |
A list with genomic features as its names and samples as its entries, indicating presence of event |
minsize |
The minimum number of events to use when calculating enrichment |
maxsize |
The maximum number of events to use when calculating enrichment |
event.type |
Type of event being analyzed |
verbose |
whether to print extra progress statements |
A list containing two elements:
Regulon-specific NULL model containing the enrichment scores
Direction of the regulon-specific NULL model