Maaslin2_wrapper {MMUPHin}R Documentation

Wrapper function for Maaslin2

Description

Wrapper function for Maaslin2

Usage

Maaslin2_wrapper(feature_abd, data, exposure, covariates = NULL,
  covariates_random = NULL, output = tempdir(),
  normalization = "TSS", transform = "AST", analysis_method = "LM")

Arguments

feature_abd

feature*sample matrix of feature abundance.

data

data frame of metadata.

exposure

name of exposure variable.

covariates

name of covariates.

covariates_random

name of random covariates.

output

directory for Maaslin2.

normalization

normalization parameter for Maaslin2.

transform

transformation parameter for Maaslin2.

analysis_method

analysis method parameter for Maaslin2.

Value

a data frame recording per-feature coefficients, p-values, etc. from running Maaslin2.


[Package MMUPHin version 1.7.2 Index]