lfmm2geno {LEA} | R Documentation |
lfmm
to geno
formatA function that converts from the lfmm
format to the
geno
format.
lfmm2geno(input.file, output.file = NULL, force = TRUE)
input.file |
A character string containing a path to the input file,
a genotypic matrix in the |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
force |
A boolean option. If FALSE, the input file is converted only if the output file does not exist. If TRUE, convert the file anyway. |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
Eric Frichot
lfmm.data
geno
ancestrymap2lfmm
ancestrymap2geno
geno2lfmm
ped2lfmm
ped2geno
vcf2geno
# Creation of a file called "genotypes.lfmm" in the working directory, # with 400 SNPs for 50 individuals. data("tutorial") write.lfmm(tutorial.R, "genotypes.lfmm") # Conversion from the lfmm format ("genotypes.lfmm") # to the geno format ("genotypes.geno"). # By default, the name of the output file is the same name # as the input file with a .geno extension. # Create file: "genotypes.geno". output = lfmm2geno("genotypes.lfmm") # Conversion from the lfmm format ("genotypes.lfmm") # to the geno format with the output file called "plop.geno". # Create file: "plop.geno". output = lfmm2geno("genotypes.lfmm", "plop.geno") # As force = false and the file "genotypes.geno" already exists, # nothing happens. output = lfmm2geno("genotypes.lfmm", force = FALSE)