G {LEA} | R Documentation |
Return the snmf
output matrix of ancestral allele frequency matrix for
the chosen run with K ancestral populations. For an example, see
snmf
.
G(object, K, run)
object |
A snmfProject object. |
K |
The number of ancestral populations. |
run |
A chosen run. |
res |
A matrix containing the ancestral allele frequencies for a run with K ancestral populations. |
Eric Frichot
### Example of analyses using snmf ### # creation of a genotype file: genotypes.geno. # The data contain 400 SNPs for 50 individuals. data("tutorial") write.geno(tutorial.R, "genotypes.geno") ################ # running snmf # ################ # Two runs for K = 1 to 5 project.snmf = snmf("genotypes.geno", K = 3, repetitions = 2, project = "new") # get the ancestral genotype frequency matrix, G, for the 2nd run for K = 3. freq = G(project.snmf, K = 3, run = 2)