genes_Stat {IntramiRExploreR} | R Documentation |
Extracting miRNAs that target a query gene.
genes_Stat( gene, geneIDType = c("GeneSymbol", "FBGN", "CGID"), method = c("Pearson", "Distance", "Both", "BothIntersect"), Platform = c("Affy1", "Affy2"), Text = FALSE, outpath = tempdir() )
gene |
character. gene Identifier. |
geneIDType |
character. GeneIDtype choices are 'GeneSymbol', 'FBGN', 'CGID' |
method |
character. Choices are 'Pearson','Distance','Both' and 'BothIntersected' |
Platform |
character. Choices are 'Affy1','Affy2'. |
Text |
logical . To choose between storing the data as text file. Default is FALSE. |
outpath |
character. The path where the data is stored if TEXT=TRUE. Default is |
Outputs the miRNA information, Target Prediction Score, miRNA miRNA function and Target Database that predicts the interaction in a dataframe. Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.
gene="Syb" genes_Stat(gene,geneIDType="GeneSymbol",method=c("Pearson"), Platform=c("Affy1"),Text=FALSE)