summary {InterMineR} | R Documentation |
Summarize the information about the constraints contained by an object of the class InterMineR.
summary(object,...)
object |
an object of the class InterMineR. |
... |
additional arguments affecting the summary produced. |
a data.frame containing the constraints of the InterMineR object as rows. Each constraint is constituted by a path, an operator and one or more values. Multiple values are returned as a comma-separated character string.
InterMine Team
# get FlyMine instance im.fly = initInterMine(listMines()["FlyMine"]) # get GO_Gene template query qGO_Gene = getTemplateQuery(im.fly, "GO_Gene") # modify GO_Gene template query to have more than one GO values go.constraints = setConstraints( values = list(c("DNA repair", "cellular response to DNA damage stimulus")), modifyQueryConstraints = qGO_Gene, m.index = 3 ) # create 'InterMineR' object go.query = setQuery( inheritQuery = qGO_Gene, where = go.constraints ) # get InterMineR constraint summary summary(go.query)