find_segmentationSites {InPAS}R Documentation

Find optimal segmentation sites by minimizing MSE

Description

Find optimal segmentation sites by minimizing MSE

Usage

find_segmentationSites(
  .ele,
  search_point_START,
  search_point_END,
  n = 1,
  savedID = NA
)

Arguments

.ele

3' UTR coverage

search_point_START

start position to calculate

search_point_END

end position to calculate

n

the length of output. If set to -1, return all candidate CP sites

savedID

the proximal CPsites

Value

a list of MSE and candidate APA sites

Author(s)

Jianhong Ou


[Package InPAS version 2.1.0 Index]