polish_CPs {InPAS}R Documentation

polish the searching results of CP sites

Description

remove the multiple positions of CP sites for same 3' UTRs and only keep the best CP sites for proximal and distal.

Usage

polish_CPs(CPs)

Arguments

CPs

output of search_proximalCPs() or adjust_proximalCPs()

Value

a matrix with columns: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"

Author(s)

Jianhong Ou

See Also

adjust_proximalCPs(), adjust_proximalCPsByPWM(), adjust_proximalCPsByNBC(), get_PAscore2()


[Package InPAS version 2.1.0 Index]