get_totalCov {InPAS} | R Documentation |
For hugeData, coverage of samples in each condition is merged chromosome by chromosome. For non-hugeData, per-chromosome coverage of all samples are returned.
get_totalCov(sqlite_db, seqname, hugeData)
sqlite_db |
A path to the SQLite database for InPAS, i.e. the output of
|
seqname |
A character(1), the chromosome/scaffold name |
hugeData |
A logical(1), indicating whether it is huge data |
A list containing coverage data. For hugeData, coverage of samples in each condition is merged chromosome by chromosome. For non-hugeData, per-chromosome coverage of all samples are returned.
chromosome/scaffold name
name tag for sample1
name tag for sample2
name tag for sampleN
Haibo Liu, Jianhong Ou