saveBplot {IVAS} | R Documentation |
Save boxplots
saveBplot(ASdb=ASdb,Total.snpdata=NULL,Total.snplocus=NULL, CalIndex=NULL,out.dir=NULL)
ASdb |
A ASdb object including "sQTLs" slot from the |
Total.snpdata |
A data frame of genotype data. |
Total.snplocus |
A data frame containing locus information of SNP markers in the snpdata. |
CalIndex |
An index number in the ASdb object which will be tested in this function. |
out.dir |
An output directory. |
This function draws the boxplot
Seonggyun Han, Sangsoo Kim
sampleDB <- system.file("extdata", "sampleDB", package="IVAS") sample.Txdb <- loadDb(sampleDB) data(sampleexp) data(samplesnp) data(samplesnplocus) ASdb <- Splicingfinder(sample.Txdb) ASdb <- RatioFromFPKM(sample.Txdb,ASdb,sampleexp) ASdb <- sQTLsFinder(ASdb,samplesnp,samplesnplocus,method="lm") saveBplot(ASdb=ASdb,Total.snpdata=samplesnp,Total.snplocus=samplesnplocus,CalIndex="ASS7",out.dir="./result")