annotation_issues {ISAnalytics}R Documentation

Check for genomic annotation problems in IS matrices.

Description

[Experimental] This helper function checks if each individual integration site, identified by the triplet (chr, integration locus, strand), has been annotated with two or more distinct gene symbols.

Usage

annotation_issues(matrix)

Arguments

matrix

Either a single matrix or a list of matrices, ideally obtained via import_parallel_Vispa2Matrices() or import_single_Vispa2Matrix()

Value

Either NULL if no issues were detected or 1 or more data frames with genomic coordinates of the IS and the number of distinct genes associated

See Also

Other Import functions helpers: matching_options(), quantification_types()

Examples

data("integration_matrices", package = "ISAnalytics")
annotation_issues(integration_matrices)

[Package ISAnalytics version 1.4.2 Index]