as_sparse_matrix {ISAnalytics}R Documentation

Converts tidy integration matrices in the original sparse matrix form.

Description

[Stable] This function is particularly useful when a sparce matrix structure is needed by a specific function (mainly from other packages).

Usage

as_sparse_matrix(
  x,
  fragmentEstimate = "fragmentEstimate",
  seqCount = "seqCount",
  barcodeCount = "barcodeCount",
  cellCount = "cellCount",
  ShsCount = "ShsCount"
)

Arguments

x

A single tidy integration matrix or a list of integration matrices. Supports also multi-quantification matrices obtained via comparison_matrix

fragmentEstimate

For multi-quantification matrix support: the name of the fragment estimate values column

seqCount

For multi-quantification matrix support: the name of the sequence count values column

barcodeCount

For multi-quantification matrix support: the name of the barcode count values column

cellCount

For multi-quantification matrix support: the name of the cell count values column

ShsCount

For multi-quantification matrix support: the name of the Shs Count values column

Value

Depending on input, 2 possible outputs:

See Also

Other Utility functions: generate_Vispa2_launch_AF(), generate_blank_association_file(), unzip_file_system()

Examples

data("integration_matrices", package = "ISAnalytics")
sparse <- as_sparse_matrix(integration_matrices)

[Package ISAnalytics version 1.4.2 Index]