generate_Vispa2_launch_AF {ISAnalytics}R Documentation

Creates a reduced association file for Vispa2 run, given project and pool

Description

The function selects the appropriate columns and prepares a file for the launch of Vispa2 pipeline for each project/pool pair specified.

Usage

generate_Vispa2_launch_AF(association_file, project, pool, path)

Arguments

association_file

The imported association file (via import_association_file)

project

A vector of characters containing project names

pool

A vector of characters containing pool names. NOTE: the names should refer to the values contained in the PoolID column of the association file and NOT the concatenatePoolIDSeqRun column!

path

A single string representing the path to the folder where files should be written. If the folder doesn't exist it will be created.

Details

Note: the function is vectorized, meaning you can specify more than one project and more than one pool as vectors of characters, but you must ensure that:

Value

returns NULL

See Also

Other Utility functions: as_sparse_matrix(), generate_blank_association_file(), unzip_file_system()

Examples

temp <- tempdir()
data("association_file", package = "ISAnalytics")
generate_Vispa2_launch_AF(association_file, "PJ01", "POOL01", temp)

[Package ISAnalytics version 1.3.6 Index]