HSC_population_plot {ISAnalytics} | R Documentation |
Plot of the estimated HSC population size for each patient.
HSC_population_plot( estimates, project_name, timepoints = "Consecutive", models = "Mth Chao (LB)" )
estimates |
The estimates data frame, obtained via
|
project_name |
The project name, will be included in the plot title |
timepoints |
Which time points to plot? One between "All", "Stable" and "Consecutive" |
models |
Name of the models to plot (as they appear in the column of the estimates) |
A plot
Other Plotting functions:
CIS_volcano_plot()
,
circos_genomic_density()
,
integration_alluvial_plot()
,
sharing_heatmap()
,
sharing_venn()
,
top_abund_tableGrob()
data("integration_matrices", package = "ISAnalytics") data("association_file", package = "ISAnalytics") aggreg <- aggregate_values_by_key( x = integration_matrices, association_file = association_file, value_cols = c("seqCount", "fragmentEstimate") ) aggreg_meta <- aggregate_metadata( association_file = association_file ) estimate <- HSC_population_size_estimate( x = aggreg, metadata = aggreg_meta, stable_timepoints = c(90, 180, 360), cell_type = "Other" ) p <- HSC_population_plot(estimate, "PJ01") p