DotPlotPathway {IRISFGM}R Documentation

DotPlotPathway

Description

Plot dotplot for enrichment pathway

Usage

DotPlotPathway(object, ...)

.dotPlotPathway(
  object = NULL,
  genes.source = c("CTS", "MC", "Bicluster"),
  showCategory = 20
)

## S4 method for signature 'IRISFGM'
DotPlotPathway(
  object = NULL,
  genes.source = c("CTS", "MC", "Bicluster"),
  showCategory = 20
)

Arguments

object

Input IRIS-FGM object

...

other arguments passed to methods

genes.source

Decide the plot source either "CTS", "MC" or "Bicluster." "CTS" means DEGs from DEsingle label, "MC" means DEGs from MC label, and "Bicluster" means using gene module from the selected bicluster.

showCategory

Show this number of pathway results.

Value

This function will generate dot plot for pathway enrichment results.

Examples

data("example_object")
DotPlotPathway(example_object, genes.source = "module" )


[Package IRISFGM version 1.1.1 Index]