ProcessData {IRISFGM} | R Documentation |
Process data via normalization and imputation.
ProcessData(object, ...) .processData( object = NULL, normalization = "cpm", library.size = 1e+05, IsImputation = FALSE ) ## S4 method for signature 'IRISFGM' ProcessData( object = NULL, normalization = "cpm", library.size = 1e+05, IsImputation = FALSE )
object |
Input IRISFGM object |
... |
other arguments passed to methods |
normalization |
two options: (1)library size noralization by using library size factor: 1e6, equal to CPM (count-per-million-reads), or (2) using 'scran' normalization method. |
library.size |
Sets the scale factor for cpm normalization |
IsImputation |
imputation method is provided by DrImpute. Default is FALSE. |
It will processdata by normalization and imputation.
data("example_object") example_object <- ProcessData(example_object, normalization = "cpm")