getStrains {IMPCdata} | R Documentation |
Returns the genetic background (MGI IDs) from which the knockout mice were derived for a specific combination of pipeline, procedure and paramater for a phenotyping center.
getStrains(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL)
PhenCenterName |
IMPC phenotyping center; mandatory argument |
PipelineID |
IMPC pipeline ID; mandatory argument |
ProcedureID |
IMPC procedure ID; mandatory argument |
ParameterID |
IMPC parameter ID; mandatory argument |
Returns the list of IMPC strains (IDS of strains) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.
Natalja Kurbatova, Jeremy Mason
listStrains <- getStrains("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001") for (strainIndex in 1:length(listStrains)) { print(paste(listStrains[strainIndex],"-", getName("strain_accession_id","strain_name",listStrains[strainIndex]))) }