getGenes {IMPCdata} | R Documentation |
Returns the genes (MGI IDs) that are reported for a specified combination of parameter, procedure, pipeline and phenotyping center.
getGenes(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL,StrainID=NULL)
PhenCenterName |
IMPC phenotyping center; mandatory argument |
PipelineID |
IMPC pipeline ID; mandatory argument |
ProcedureID |
IMPC procedure ID; mandatory argument |
ParameterID |
IMPC parameter ID; mandatory argument |
StrainID |
IMPC strain ID; optional argument |
Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.
Natalja Kurbatova, Jeremy Mason
listGenes <- getGenes("RBRC","IMPC_001","IMPC_GRS_001","IMPC_GRS_003_001") for (geneIndex in 1:min(length(listGenes), 5)) { print(paste(listGenes[geneIndex],"-", getName("gene_accession_id","gene_symbol",listGenes[geneIndex]))) }