pmMultiBarplot {HiLDA}R Documentation

Plot both mutation signatures and their mutational exposures from pmsignature output for more than two groups

Description

Plot both mutation signatures and their mutational exposures from pmsignature output for more than two groups

Usage

pmMultiBarplot(
  inputG,
  inputParam,
  sigOrder = NULL,
  groupIndices,
  sortSampleNum = TRUE,
  charSize = 3
)

Arguments

inputG

a MutationFeatureData S4 class output by the pmsignature.

inputParam

a estimatedParameters S4 class output by the pmsignature.

sigOrder

the order of signatures if needed (default: NULL).

groupIndices

a vector of group indicators.

sortSampleNum

an indictor variable on whether samples are sorted by the number of mutations (default: TRUE).

charSize

the size of the character on the signature plot (default: 3)

Value

a list of the signature plot and the mean difference plot.

Examples


load(system.file("extdata/sample.rdata", package="HiLDA"))
Param <- pmgetSignature(G, K = 3)

pmPlots <- pmMultiBarplot(G, Param, groupIndices=c(1, rep(2,3), rep(3,6)))
cowplot::plot_grid(pmPlots$sigPlot, pmPlots$propPlot, rel_widths = c(1,3))


[Package HiLDA version 1.7.6 Index]