updateMstepFQC {HiLDA} | R Documentation |
Update the parameter F and Q (M-step in the EM-algorithm)
updateMstepFQC( vPatternList, vSparseCount, nTheta, fdim, signatureNum, sampleNum, patternNum, samplePatternNum, isBackground )
vPatternList |
The list of possible mutation features (converted to a vector) |
vSparseCount |
The table showing (mutation feature, sample, the number of mutation) (converted to a vector) |
nTheta |
The parameters in the distribution |
fdim |
a vector specifying the number of possible values for each mutation signature |
signatureNum |
the number of mutation signatures |
sampleNum |
the number of cancer genomes |
patternNum |
the number of possible combinations of all the mutation features |
samplePatternNum |
the number of possible combination of samples and mutation patternns |
isBackground |
the logical value showing whether a background mutaiton features is included or not |
a vector