calculateQD_Sm {HPiP}R Documentation

Calculate Quadruples Composition (QC) Descriptor from Biochemical Similarity Classes

Description

This function calculates Quadruples Composition (QC) descriptor from biochemical similarity classes.

Usage

calculateQD_Sm(x)

Arguments

x

A data.frame containing gene/protein names and their fasta sequences.

Details

calculateQD_Sm

Value

A length 1296 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, matinerb.94@gmail.com

References

Ahmed, I., Witbooi, P., and Christoffels, A. (2018). Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network.Bioinformatics 34, 4159–4164.

Examples

data(UP000464024_df)
x_df <- calculateQD_Sm(UP000464024_df)
head(x_df, n = 2L)

[Package HPiP version 0.99.18 Index]