calculateBE {HPiP}R Documentation

Tranform a Seqeuence into Binary Encoding (BE)

Description

This function transform each residue in a peptide into 20 coding values.

Usage

calculateBE(x)

Arguments

x

A data.frame containing gene/protein names and their fasta sequences.

Details

calculateBE

Value

A length 400 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, matinerb.94@gmail.com

References

Al-Barakati, H. J., Saigo, H., and Newman, R. H. (2019). RF-GlutarySite: a random forest based predictor for glutarylation sites. Mol. Omi. 15, 189–204.

Examples

data(UP000464024_df)
x_df <- calculateBE(UP000464024_df)
head(x_df, n = 2L)

[Package HPiP version 0.99.18 Index]