hippo_diagnostic_plot {HIPPO}R Documentation

Conduct feature selection by computing test statistics for each gene

Description

Conduct feature selection by computing test statistics for each gene

Usage

hippo_diagnostic_plot(sce, show_outliers = FALSE, zvalue_thresh = 10)

Arguments

sce

SingleCellExperiment object with count matrix

show_outliers

boolean to indicate whether to circle the outliers with given zvalue_thresh

zvalue_thresh

a numeric v for defining outliers

Value

a diagnostic plot that shows genes with zero inflation

Examples

data(toydata)
hippo_diagnostic_plot(toydata, show_outliers=TRUE, zvalue_thresh = 2)

[Package HIPPO version 1.5.0 Index]