hippo_umap_plot {HIPPO} | R Documentation |
visualize each round of hippo through UMAP
hippo_umap_plot(sce, k = NA, pointsize = 0.5, pointalpha = 0.5, plottitle = "")
sce |
SingleCellExperiment object with hippo and UMAP result in it |
k |
number of rounds of clustering that you'd like to see result. Default is 1 to K |
pointsize |
size of the point for the plot (default 0.5) |
pointalpha |
transparency level of points for the plot (default 0.5) |
plottitle |
title of the resulting plot |
ggplot object for umap in each round
data(toydata) set.seed(20200321) toydata = hippo(toydata,K = 10,z_threshold = 1,outlier_proportion = 0.01) toydata = hippo_dimension_reduction(toydata, method="umap") hippo_umap_plot(toydata)