loadAnnot {GladiaTOX} | R Documentation |
This function parses the output from the GUI and registers the appropriate data within the GladiaTOX database.
loadAnnot(plate, assay, outFile = "out.json")
plate |
path to 'plate' JSON file produced by the GUI |
assay |
path to 'assay' JSON file produced by the GUI |
outFile |
character of length 1, name of the output file |
If loading legacy data, 'outFile' should be set to NULL and no JSON file will be written.
Logical value
## Not run: ## Load sample data load(system.file("extdata", "data_for_vignette.rda", package="GladiaTOX")) ## Build assay table assay <- buildAssayTab(plate, chnmap) ## Set study parameters std.nm <- "SampleStudy" # study name phs.nm <- "PhaseII" # study phase ## Delete previously loaded study data asid = gtoxLoadAsid(fld=c("asnm", "asph"), val=list(std.nm, phs.nm))$asid if(length(asid)>0){ deleteStudy(asid=asid) } ## Load annotation in gtoxDB loadAnnot(plate, assay, NULL) ## End(Not run)