aggregateCounts {GeomxTools} | R Documentation |
Aggregate probe counts to target level for feature data
aggregateCounts(object, FUN = ngeoMean)
object |
name of the NanoStringGeoMxSet object to aggregate |
FUN |
function to use for count aggregation |
a NanoStringGeoMxSet object with targets as features
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package="GeomxTools") demoData <- readRDS(file.path(datadir, "/demoData.rds")) targetGeoMxSet <- aggregateCounts(demoData)