checkQCFlags,NanoStringGeoMxSet-method {GeomxTools} | R Documentation |
checkQCFlags
## S4 method for signature 'NanoStringGeoMxSet' checkQCFlags(object, removeLowLocalOutliers = FALSE, ...)
object |
name of the NanoStringGeoMxSet object to check the QC Flags |
removeLowLocalOutliers |
logical, if TRUE it sets outlier counts to zero, default is FALSE, |
... |
optional arguments |
NanoStringGeoMxSet
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package = "GeomxTools" ) demoData <- readRDS(file.path(datadir, "/demoData.rds")) QCobject <- checkQCFlags(demoData)