summarizeNegatives {GeomxTools} | R Documentation |
Calculate negative probe summary stats
summarizeNegatives(object, functionList = c())
object |
name of the NanoStringGeoMxSet object to summarize |
functionList |
optional list of additional functions to calculate negative probe stats, list element names should correspond to expected stat column header |
a NanoStringGeoMxSet object with negative probe summary stats appended to sample data
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package="GeomxTools") demoData <- readRDS(file.path(datadir, "/demoData.rds")) demoData <- summarizeNegatives(demoData, functionList=c(mean=mean, min=min, max=max))