makeGeneList {GenomicSuperSignature}R Documentation

Order genes in loading vectors

Description

This function takes Z matrix (= averaged loadings) and orders the genes in each loading vector (= RAV) in a descending manner.

Usage

makeGeneList(LoadingMatrix, LoadingVector = NULL, abs = TRUE)

Arguments

LoadingMatrix

An avgloading matrix. Rows represent genes and columns represent clusters of principle components

LoadingVector

A list of column names or indexes of LoadingMatrix you want to check. Default is NULL, under which the function takes the all column names of LoadingMatrix

abs

Under the defaul condition (TRUE), this function will create a gene list based on the absolute value.

Value

A list of loadings selected by LoadingVector, where all the genes in each loading are listed in descending order.


[Package GenomicSuperSignature version 1.1.8 Index]