findSignature {GenomicSuperSignature} | R Documentation |
This function finds RAVs containing the keyword you provide. If you provide
"the number of keyword-containing pathways per RAV" in argument k
,
it will give you the RAV number.
findSignature(RAVmodel, keyword, n = 5, k = NULL)
RAVmodel |
PCAGenomicSignatures-object |
keyword |
A character vector. If you are searching for multiple keywords
at the same time, use |
n |
The number of top ranked (based on abs(NES)) pathways you want to search your keyword |
k |
The number of keyword-containing pathways you want to get the RAV
number. Under default ( |
A data frame or integer vector depending on the parameter k
.
data(miniRAVmodel) findSignature(miniRAVmodel, "Bcell") findSignature(miniRAVmodel, "Bcell", k = 5)