subsetEnrichedPathways {GenomicSuperSignature} | R Documentation |
Subset enriched pathways of RAV
subsetEnrichedPathways(RAVmodel, ind = NULL, n = 10, both = FALSE)
RAVmodel |
PCAGenomicSignatures object. Also an output from
|
ind |
A numeric vector containing the RAV number you want to check enriched pathways. If not specified, this function returns results from all the RAVs. |
n |
The number of top and bottom pathways to be selected based on normalized enrichment score (NES). |
both |
Default is |
A DataFrame with top and bottom n
pathways from the
enrichment results.
data(miniRAVmodel) # all RAVS in model subsetEnrichedPathways(miniRAVmodel,n=5) # only a specific RAV (note the colnames above) subsetEnrichedPathways(miniRAVmodel,ind=695,n=5)