run_gsea {GenomicSuperSignature} | R Documentation |
This function is a wrapper of
GSEA
function, making it applicable to a list
of gene lists. Set seed for reproducible result.
run_gsea( geneList, TERM2GENE, TERM2NAME, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 0.05, verbose = FALSE, ... )
geneList |
A list of genes ordered by rank |
TERM2GENE |
User input annotation of TERM TO GENE mapping, a data frame of 2 column with term and gene |
TERM2NAME |
User input of TERM TO NAME mapping, a data.frame of 2 column with term and name. Optional. |
minGSSize |
A mininum size of gene set to be analyzed |
maxGSSize |
A maximum size of gene set to be analyzed |
pvalueCutoff |
p-value cutoff |
verbose |
Logical. Default is |
... |
Any additional argument inherited from
|
A list of gseaResult
objects. If there is no enrichment
result, NA
will be returned.