UTR2UTR53 {GeneStructureTools} | R Documentation |
Annotate UTRs from Gencode GTF as 5' or 3'
UTR2UTR53(gtf)
gtf |
GRanges object of the GTF |
gtf annotation GRanges object
Beth Signal
Other gtf manipulation: addBroadTypes
,
exonsToTranscripts
,
filterGtfOverlap
,
removeDuplicateTranscripts
,
removeSameExon
,
reorderExonNumbers
gtfFile <- system.file("extdata","example_gtf.gtf", package = "GeneStructureTools") gtf <- rtracklayer::import(gtfFile) gtf <- UTR2UTR53(gtf) table(gtf$type)