removeSameExon {GeneStructureTools} | R Documentation |
Removes structural duplicates of exons in a GRanges object
removeSameExon(exons)
exons |
GRanges object with exons |
GRanges object with unique exons
Beth Signal
Other gtf manipulation: UTR2UTR53
,
addBroadTypes
,
exonsToTranscripts
,
filterGtfOverlap
,
removeDuplicateTranscripts
,
reorderExonNumbers
gtf <- rtracklayer::import(system.file("extdata","example_gtf.gtf", package = "GeneStructureTools")) exons <- gtf[gtf$type=="exon"] exons.duplicated <- c(exons[1:4], exons[1:4]) length(exons.duplicated) exons.deduplicated <- removeSameExon(exons.duplicated) length(exons.deduplicated)