networkFromGenes {GeneNetworkBuilder} | R Documentation |
By providing a list of given genes, build a network for input of filterNetwork.
networkFromGenes(genes, interactionmap, level = 3)
genes |
A vector of character for interested genes. |
interactionmap |
Transcription regulatory map. Column names of interactionmap must be 'from','to' |
level |
Depth of node path |
a list with elements: rootgene: The nodes with maximal connetions. sifNetwork: Transcription regulatory network table.
data("ce.interactionmap") data("example.data") genes <- as.character(example.data$ce.bind$from) xx<-networkFromGenes(example.data$ce.bind, ce.interactionmap, level=2)