exportNetwork {GeneNetworkBuilder} | R Documentation |
Save graph into HTML, json or xgmml format.
exportNetwork(network, file, format = c("HTML", "json", "XGMML"), ...)
network |
output of browseNetwork |
file |
Name of the file to save to. |
format |
type in which graph shall be saved. Could be one of HTML, json or XGMML. |
... |
Parameter could be used by saveWidget for HTML or writeLines for json or saveXML for XGMML. |
data("ce.miRNA.map") data("example.data") data("ce.interactionmap") data("ce.IDsMap") sifNetwork<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2) cifNetwork<-filterNetwork(rootgene=ce.IDsMap["DAF-16"], sifNetwork=sifNetwork, exprsData=uniqueExprsData(example.data$ce.exprData, "Max", condenseName='logFC'), mergeBy="symbols", miRNAlist=as.character(ce.miRNA.map[ , 1]), tolerance=1) gR<-polishNetwork(cifNetwork) network <- browseNetwork(gR) exportNetwork(network, "sample.html")