topPATHGenes {GeneAnswers} | R Documentation |
Function to present top KEGG enichmentInfo of given GeneAnswers instance with genes.
topPATHGenes(x, catTerm = TRUE, keepID=TRUE, geneSymbol = TRUE, ...)
x |
a given GeneAnswers instance with KEGG test |
catTerm |
logic value to determine whether mapping KEGG IDs to KEGG terms |
keepID |
logic, to determine whether keep KEGG IDs |
geneSymbol |
logic value to determine whether mapping gene Entrez IDs to gene symbols |
... |
other parameters to transfer to topCategoryGenes |
See function topCategoryGenes help for details
print necessary information on the screen and save into a specified file if request.
Gang Feng, Pan Du and Simon Lin
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10
~~objects to See Also as topCategoryGenes
, ~~~
##x is a GeneAnswers instance with KEGG test ## Not run: topPATHGenes(x, geneSymbol=TRUE, orderby='genenum', top=6, topGenes=8, genesOrderBy='foldChange')