DO {GeneAnswers} | R Documentation |
Several data objects related with DO (Disease Ontology) and its mapping to genes
data(DO)
The data file "DO.rda" includes five datasets:
DO.graph.gene: a graphNEL object, which shows the ontology relations of DO
DO.graph.closure.gene: a graphNEL object, whose edges represent the link between a DO term and its offspring ontology terms. Only the DO terms with gene mappings were included.
DO2gene.map: a list show the mapping from DOIDs to genes
gene2DO.map: a list show the mapping from genes to DOIDs
DO.terms: a named character vector. Its names are DOIDs and elements are DO.terms
data(DO) datasets <- c("DO.graph.gene", "DO.graph.closure.gene", "DO2gene.map", "gene2DO.map", "DO.terms") # check the existence of these datasets: sapply(datasets, exists)