categoryNet {GeneAnswers} | R Documentation |
Function to plot a linkages of specified categories.
categoryNet(catGenesList, centroidSize=NULL, output=c('fixed','interactive'))
catGenesList |
a list of categories. |
centroidSize |
a numeric vector to specify the size of concept nodes. If NULL, all of concept nodes are represented as the same size solid circles. |
output |
type to specify output figure types. |
catGenesList is a list of categories. Each element contains the genes in the corresponding category, respectively. And the names of the list are categories. If centroidSize is a numeric vector, its values are mapped to the categories in the catGenesList sequentially.
A category linkage is generated.
Gang Feng, Pan Du and Simon Lin
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10
input <- list('cat1'=c(1,4,2,5), 'cat2'=c(3,5,8,9), 'cat3'=c(2,4,5,9), 'cat4'=c(1,5,3)) ## Not run: categoryNet(input)