VEP_v88-class {GenVisR} | R Documentation |
An S4 class to represent data in variant effect predictor version 88 format, inherits from the VEP_Virtual class, under development!!!
VEP_v88(vepData, vepHeader)
vepData |
data.table object containing a VEP annotation file conforming to the version 88 specifications. |
vepHeader |
Object of class list containing character vectors for vep header information. |
header
data.table object containing header information
description
data.table object containing column descriptions
position
data.table object containing column names "chromosome_name", "start", "stop".
mutation
data.table object containing column names "reference", "variant", "trv_type".
sample
data.table object containing columns names "sample".
meta
data.table object containing meta data.