.contingencyTable {GWENA} | R Documentation |
Calculate a contigency table of module overlap between datasets
.contingencyTable(modAssignments, mods, tiNodelist)
modAssignments |
a list where the first element is the 'moduleAssignments' vector in the discovery dataset, and the second element is the 'moduleAssignments vector in the test dataset. |
mods |
the 'modules' vector for the discovery dataset. |
tiNodelist |
a vector of node IDs in the test dataset. |
A list containing a contigency table, a vector of the proportion of
nodes present in the test dataset for each module, a vector containing
the number of nodes present in the test dataset for each module, a vector
of the node names present in both the discovery and test datasets, a vector
of modules that are both requested and have nodes present in the test
dataset, and the modAssignments
vector containing only nodes present
in the test dataset.