AlvMac_allGO {GOexpress}R Documentation

Example of custom gene ontology annotations.

Description

An example data.frame providing the identifier, name and namespace corresponding to gene ontology identifiers, compatible with the AlvMac example ExpressionSet.

Usage

data("AlvMac_allGO")

Details

This data-frame includes all gene ontologies present in the btaurus_gene_ensembl dataset of the Ensembl BioMart server, including those associated with no gene identifier in the AlvMac example ExpressionSet.

See the help page of the GO_analyse function for an example usage.

Value

A data frame detailing information about 13,302 gene ontologies:

Source

These annotations were obtained from the Ensembl BioMart server using the biomaRt package to access the Ensembl release 75 http://feb2014.archive.ensembl.org.

Examples

# Load the data
data(AlvMac_allGO)

# Structure of the data
str(AlvMac_allGO)

# First few rows
head(AlvMac_allGO)


[Package GOexpress version 1.27.0 Index]