list_genes {GOexpress} | R Documentation |
Given a Gene Ontology (GO) identifier represented in the dataset, returns a character vector listing the feature identifiers annotated to it.
list_genes(go_id, result, data.only=TRUE)
go_id |
A Gene Ontology (GO) identifier represented in the dataset. |
result |
The output of |
data.only |
Whether to return only the feature identifiers present in the given dataset or alternatively returns all feature identifiers associated with the GO term in the Ensembl BioMart. Default is TRUE. |
A character vector listing the feature identifiers of the genes associated with the GO term.
Kevin Rue-Albrecht
Method GO_analyse
.
# load the sample output data data(AlvMac_results) # List of genes associated with the GO term "toll-like receptor 4 signaling # pathway" list_genes(result=AlvMac_results, go_id="GO:0034142")