gdcFilterSampleType {GDCRNATools}R Documentation

Filter out other type of samples

Description

Filter out samples that are neither Solid Tissue Normal nor Primary Tumor

Usage

gdcFilterSampleType(metadata)

Arguments

metadata

metadata parsed from gdcParseMetadata

Value

A filtered dataframe of metadata with Solid Tissue Normal and Primary Tumor samples only

Author(s)

Ruidong Li and Han Qu

Examples

####### Parse metadata by project id and data type #######
metaMatrix <- gdcParseMetadata(project.id='TARGET-RT', data.type='RNAseq')
metaMatrix <- gdcFilterSampleType(metadata=metaMatrix)

[Package GDCRNATools version 1.13.1 Index]