gdcParseMetadata {GDCRNATools} | R Documentation |
Parse metadata either by providing the .json file that is downloaded from GDC cart or by parse metadata automatically by providing the projct id and data type
gdcParseMetadata(metafile = NULL, project.id, data.type, write.meta = FALSE)
metafile |
metadata file in |
project.id |
project id in GDC |
data.type |
one of |
write.meta |
logical, whether to write the metadata to a
|
A dataframe of metadata containing file_name, sample_id, etc. as well as some basic clinical data
Ruidong Li and Han Qu
####### Merge RNA expression data ####### metaMatrix <- gdcParseMetadata(project.id='TARGET-RT', data.type='RNAseq')