examdata_degs {FoldGO} | R Documentation |
We used two datasets in examples:
RNA-seq experiment on auxin treatment of Arabidopsis thaliana roots (degenes)
RNA-seq experiment on mRNA differential expression in LNCaP cells expressing the wild-type androgen receptor (AR-WT) or the ligand-independent AR-V7 splice variant (degenes_hum)
degenes degenes_hum
A dataframes with 4 variables and 789 and 2079 for A. thaliana and H. sapiens correspondingly, where colnames are:
Gene identifier
fold-change value
p-value
Benjamini-Yekutieli adjusted p-value
A. thaliana and auxin: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97258
H. sapiens LNCap AR-V7: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71334
# load degenes from RNA-seq experiment on auxin treatment of Arabidopsis thaliana roots data("degenes")