jaccard_findIT_TTpair {FindIT2}R Documentation

jaccard_findIT_TTpair

Description

jaccard_findIT_TTpair

Usage

jaccard_findIT_TTpair(input_genes, TF_target_database, input_TF_id)

Arguments

input_genes

a character vector which represent gene set which you want to find influential TF for (same as your find_IT_TTpair parameter)

TF_target_database

TF_target pair data

input_TF_id

TF_id which you want to calculate jaccard index for

Value

jaccard similarity matrix

Examples


data("TF_target_database")
data("test_geneSet")
result_findIT_TTPair <- findIT_TTPair(
    input_genes = test_geneSet,
    TF_target_database = TF_target_database
)

jaccard_findIT_TTpair(
    input_genes = test_geneSet,
    TF_target_database = TF_target_database,
    input_TF_id = result_findIT_TTPair$TF_id[1:3]
)

[Package FindIT2 version 1.0.2 Index]