gff3_to_bed12 {FLAMES}R Documentation

GFF3 to BED12

Description

Converts a gff3 file to a bed12

Usage

gff3_to_bed12(gff3_file, bed12_file)

Arguments

gff3_file

The file path to the GFF3 file to convert

bed12_file

The file path of the bed12 output file.

Value

file path to the created bed12_file.

Examples

annot <- system.file("extdata/SIRV_anno.gtf", package = "FLAMES")
out_bed <- tempfile(fileext = ".bed12")
## Not run: 
gff3_to_bed12(annot, out_bed)

## End(Not run)

[Package FLAMES version 0.99.31 Index]