parse_json_config {FLAMES}R Documentation

Parse Json Configuration File

Description

Convert a json configuration file into a named R list, grouped into sub lists according to their usage in the Flames pipeline.

Usage

parse_json_config(json_file)

Arguments

json_file

the file path to the JSON file to convert into an R list. This can be the default FLAMES configuration file found using get_default_config_file()

Value

A named R list of the parameters in json_file. Subsections are: pipeline_parameters, global_parameters, isoform_parameters, alignment_parameters, realign_parameters and transcript_counting.

Examples

config <- get_default_config_file()
## Not run: 
parse_json_config(config)

## End(Not run)

[Package FLAMES version 0.99.31 Index]