cal_MSE {FEAST}R Documentation

Standard way to preprocess the count matrix. It is the QC step for the genes.

Description

Standard way to preprocess the count matrix. It is the QC step for the genes.

Usage

cal_MSE(Ynorm, cluster, return_mses = FALSE)

Arguments

Ynorm

A normalized gene expression matrix. If not, we will normalize it for you.

cluster

The clustering outcomes. Specifically, they are cluster labels.

return_mses

True or False indicating whether returning the MSE.

Value

The MSE of the clustering centers with the predicted Y.

Examples

data(Yan)
Ynorm = Norm_Y(Y)
cluster = trueclass
MSE_res = cal_MSE(Ynorm, cluster)

[Package FEAST version 1.1.2 Index]