TSCAN_Clust {FEAST}R Documentation

TSCAN Clustering

Description

TSCAN Clustering

Usage

TSCAN_Clust(Y, k, minexpr_percent = 0.5, cvcutoff = 1, input_markers = NULL)

Arguments

Y

A expression matrix. It is recommended to use the raw count matrix.

k

The number of clusters. If it is not provided, k is estimated by the default method in SC3.

minexpr_percent

minimum expression threshold (default = 0.5).

cvcutoff

the cv cutoff to filter the genes (default = 1).

input_markers

A character vector including the featured genes. If they are not presented, SC3 will take care of this.

Value

the clustering labels and the featured genes.

Examples

 data(Yan)
 k = length(unique(trueclass))
 # TSCAN_res = TSCAN_Clust(Y, k=k)

[Package FEAST version 1.1.2 Index]