EventDetectionMultipath {EventPointer}R Documentation

Detect splicing multipath events using EventPointer methodology

Description

Identification of all the multipath alternative splicing events in the splicing graphs

Usage

EventDetectionMultipath(Input, cores, Path, paths = 2)

Arguments

Input

Output of the PrepareBam_EP function

cores

Number of cores used for parallel processing

Path

Directory where to write the EventsFound_RNASeq.txt file

paths

Maximum number of paths of the events to find.

Value

list with all the events found for all the genes present in the experiment. It also generates a file called EventsFound_RNASeq.txt with the information each event.

Examples

  # Run EventDetection function
   data(SG_RNASeq)
   TxtPath<-tempdir()
   AllEvents_RNASeq_MP<-EventDetectionMultipath(SG_RNASeq,cores=1,Path=TxtPath,paths=3)


[Package EventPointer version 3.1.0 Index]