addDistNearestTSS {ELMER} | R Documentation |
Calculate the distance between probe and gene TSS
addDistNearestTSS(data, NearGenes, genome, met.platform, cores = 1)
data |
A multi Assay Experiment with both DNA methylation and gene Expression objects |
NearGenes |
A list or a data frame with the pairs gene probes |
genome |
Which genome build will be used: hg38 (default) or hg19. |
met.platform |
DNA methyaltion platform to retrieve data from: EPIC or 450K (default) |
cores |
Number fo cores to be used. Deafult: 1 |
## Not run: data <- ELMER:::getdata("elmer.data.example") NearbyGenes <- GetNearGenes(data = data, probes = c("cg15924102", "cg24741609"), numFlankingGenes = 20) NearbyGenes <- addDistNearestTSS(data,NearbyGenes) ## End(Not run)