Stat.nonpara.permu {ELMER} | R Documentation |
Stat.nonpara.permu
Stat.nonpara.permu( Probe, Gene, Top = 0.2, correlation = "negative", unmethy = NULL, methy = NULL, Meths = Meths, Exps = Exps )
Probe |
A character of name of Probe in array. |
Gene |
A vector of gene ID. |
Top |
A number determines the percentage of top methylated/unmethylated samples. Only used if unmethy and methy are not set. |
correlation |
Type of correlation to evaluate (negative or positive). Negative (default) checks if hypomethylated region has a upregulated target gene. Positive checks if region hypermethylated has a upregulated target gene. |
unmethy |
Index of U (unmethylated) group. |
methy |
Index of M (methylated) group. |
Meths |
A matrix contains methylation for each probe (row) and each sample (column). |
Exps |
A matrix contains Expression for each gene (row) and each sample (column). |
U test results