intermediateMat {Dune}R Documentation

Find the clustering matrix that we would get if we stopped the ARI merging early

Description

Find the clustering matrix that we would get if we stopped the ARI merging early

Usage

intermediateMat(merger, p = 1, average_n = NULL, n_steps = NULL)

Arguments

merger

the result from having run Dune on the dataset

p

A value between 0 and 1. We stop when the metric used for merging has improved by p of the final total improvement. Default to 1 (i.e running the full merging).

average_n

Alternatively, you can specify the average number of clusters you want to have.

n_steps

Finally, you can specify the number of merging steps to do before stopping.

Details

If more than one of p,average_n and n_steps is specified, then the order of preference is n_steps, then average_n then p.

Value

A data.frame with the same dimensions as the currentMat of the merger argument, plus one column with cell names, related to the rownames of the original input

Examples

data("clusMat", package = "Dune")
merger <- Dune(clusMat = clusMat)
head(intermediateMat(merger, n_steps = 1))

[Package Dune version 1.5.0 Index]