getPatientOutlierMatrix {DriverNet} | R Documentation |
Given a real-value patient expression matrix, compute the patient outlier matrix and remove the genes which are not expressed.
getPatientOutlierMatrix(patExpMatrix, th=2)
patExpMatrix |
Patient Expression Matrix |
th |
The threshold, the default value is 2 ( the gene expression values outside the 2 standard deviation range are considered as outliers). |
The output patOutMatrix is an input to the computeDrivers method
Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah
Maintainer: Jiarui Ding <jiaruid@cs.ubc.ca>
computeDrivers
data(samplePatientExpressionMatrix) samplePatientOutlierMatrix = getPatientOutlierMatrix(samplePatientExpressionMatrix)