DBA tamoxifen resistance dataset {DiffBind}R Documentation

Tamoxifen resistance dataset used for DBA examples

Description

Tamoxifen resistance dataset used for DBA examples

Usage

data(tamoxifen_peaks)

data(tamoxifen_counts)

data(tamoxifen_analysis)

data(tamoxifen_greylist)

Arguments

tamoxifen_peaks

load tamoxifen resistance dataset DBA object with peak (occupancy) data

tamoxifen_counts

load tamoxifen resistance dataset DBA object with count (affinity) data. Also includes background bins counts for background normalization.

tamoxifen_analysis

load tamoxifen resistance dataset DBA object with count (affinity) data and DESeq2-based differential binding analysis results. This analysis uses a blacklists, computed greylists, background normalization, and a two-factor design.

tamoxifen_greylist

load greylist for tamoxifen dataset. Generated as shown in dba.blacklist example: dba.blacklist.

Details

The tamoxifen resistance dataset is used for the DBA vignette and man page examples.

Data used to create these objects can be downloaded at https://content.cruk.cam.ac.uk/bioinformatics/software/DiffBind/DiffBind_vignette_data.tar.gz.

Value

loads a DBA object named tamoxifen (or tamoxifen.greylist).

Note

The script for generating these files (GenerateDataFiles.R) is included with the package in the inst/extras directory.

Author(s)

Rory Stark

Examples

data(tamoxifen_peaks)
tamoxifen
data(tamoxifen_counts)
plot(tamoxifen)
data(tamoxifen_analysis)
dba.plotMA(tamoxifen)
data(tamoxifen_greylist)
tamoxifen.greylist$master

[Package DiffBind version 3.4.10 Index]